Protein Info for LRK53_RS06345 in Rhodanobacter sp000427505 FW510-R12

Annotation: 30S ribosomal protein S12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00981: ribosomal protein uS12
  • amino acids 1 to 124 (124 residues), 223.2 bits, E=3.2e-71
• PF00164: Ribosom_S12_S23
  • amino acids 19 to 124 (106 residues), 134.6 bits, E=5.7e-44

Best Hits

Swiss-Prot: 86% identical to RS12_SHESR: 30S ribosomal protein S12 (rpsL) from Shewanella sp. (strain MR-7)

KEGG orthology group: K02950, small subunit ribosomal protein S12 (inferred from 89% identity to psu:Psesu_2340)

MetaCyc: 81% identical to 30S ribosomal subunit protein S12 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S12p (S23e)" in subsystem Ribosomal protein S12p Asp methylthiotransferase or Ribosome SSU bacterial

Protein Sequence (124 amino acids)

>LRK53_RS06345 30S ribosomal protein S12 (Rhodanobacter sp000427505 FW510-R12)
MTTVNQLVRKNRSPKTYKSGSPALQSSPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNG
FEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDCAGVTKRRQSRSKYGAK
RPKK