Protein Info for LRK53_RS06230 in Rhodanobacter sp000427505 FW510-R12

Annotation: lipoprotein insertase outer membrane protein LolB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR00548: outer membrane lipoprotein LolB" amino acids 5 to 201 (197 residues), 80.5 bits, see alignment E=6.3e-27 PF03550: LolB" amino acids 49 to 200 (152 residues), 131.1 bits, see alignment E=1.8e-42

Best Hits

Swiss-Prot: 32% identical to LOLB_CHRSD: Outer-membrane lipoprotein LolB (lolB) from Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)

KEGG orthology group: K02494, outer membrane lipoprotein LolB (inferred from 38% identity to sml:Smlt0873)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (203 amino acids)

>LRK53_RS06230 lipoprotein insertase outer membrane protein LolB (Rhodanobacter sp000427505 FW510-R12)
MRRWLRLLVAVALPLLLAACVPPAVRVKGDAALFDAQFAREHALARADHWELQGRLGVSN
GKDGGSGSFSWTQDGAQYEFVLRGPAISGMNFRLSGGPDGALLEGVEHGPLRGPDAEALM
HKALGWEVPLRDLRAWVLGLRADSGPAELSFGENRLPSLLQQDGWTVDYREWDEARQPPL
PTKVFAGKPPFKVKLSIESWQFR