Protein Info for LRK53_RS05970 in Rhodanobacter sp000427505 FW510-R12

Annotation: glycosyltransferase family 4 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 PF13579: Glyco_trans_4_4" amino acids 23 to 170 (148 residues), 31.2 bits, see alignment E=6.6e-11 PF13439: Glyco_transf_4" amino acids 23 to 173 (151 residues), 42.9 bits, see alignment E=1.4e-14 PF00534: Glycos_transf_1" amino acids 184 to 352 (169 residues), 100.9 bits, see alignment E=1.6e-32 PF13692: Glyco_trans_1_4" amino acids 194 to 349 (156 residues), 95 bits, see alignment E=1.3e-30

Best Hits

KEGG orthology group: None (inferred from 48% identity to tgr:Tgr7_0793)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (386 amino acids)

>LRK53_RS05970 glycosyltransferase family 4 protein (Rhodanobacter sp000427505 FW510-R12)
MHDGSDPRRVALLVTRNFPPLLGGMEKVNQHLLAALQPVWRTALCGPSGCAGYAPSQTEV
IESRVKPLPIFLAATLWRAVRLAWRCKPEWVIAGSGLTAPIAWLAAKCVGGRAIVYLHGL
DIVAPSRAYQRLWLPFIRRCDLVLVNSANTARLATGRGVAAGKLRVLHPGTDLPTLDAAA
ASDFRQRHGFAQRPLLLSVGRLTERKGLVEFVAKALPAIVARYPNALLTVIGDEASDALH
ARAGSERERILAAARIAGVEQNLHFLGRCDEATLGAAYQAADMHIFPVRDLPGDVEGFGM
VALESAAHGLPTVAFAVGGVPDAVHDGQTGILVEPGNYVALGEAVIWQLAQTRESATIAA
CREFAAGKAWSIFDERTRSLLGTPYV