Protein Info for LRK53_RS04560 in Rhodanobacter sp000427505 FW510-R12

Annotation: EAL domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 966 PF13185: GAF_2" amino acids 148 to 293 (146 residues), 34 bits, see alignment E=8.2e-12 amino acids 348 to 486 (139 residues), 51.3 bits, see alignment E=3.7e-17 PF01590: GAF" amino acids 160 to 292 (133 residues), 29.5 bits, see alignment E=2.5e-10 amino acids 357 to 485 (129 residues), 38.4 bits, see alignment E=4.4e-13 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 534 to 698 (165 residues), 139 bits, see alignment E=5.9e-45 PF00990: GGDEF" amino acids 538 to 694 (157 residues), 168 bits, see alignment E=3.8e-53 PF00563: EAL" amino acids 716 to 949 (234 residues), 232.4 bits, see alignment E=1.2e-72

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (966 amino acids)

>LRK53_RS04560 EAL domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MSATPTIRSSQPPPVAKDLAALHAAVERLFEASDAAGVMEVCELMLDNLGIHGRLRWRRM
DEQPGHLAGQLVLAEDPQGPRSLVLEWADLPLPEPLRERLDWLGRLADVRLHQLAETSRL
YEAISRLAQAERLQRALYAIAEQAGAEHDMPEMIRSLHAIVSSLMYAENFYIVLYDAVTE
TVRFPYYVDIKDTDPPPPEQSVPLQDMLHSLTWNLLQEGRPLMGSIDELRQQFSNRLVPL
GPSCEHWLGAPLLRAGRVVGGIVMQSYRADTHYSRHDLELLNYVAQHVQTALERREAHLE
LGRRVTDRTAALREANRVLRQQVLQRQRGERLQAALFRIAELSNTSDSLDKFYAAMHQVI
SGLLYARNFYIALLDEESGHLTFPYSVDDVENVRPSRAHGRGATEYVLRHAKPLLATPAE
IDRLSAQGEISHFGARSVCWLGVPLIWGGKAMGVLALQSYSPEHTYNERDQELLTFVSYH
IANALQRKQAAASLKHAYAGLERRVTERTRALALANRDLREQIAERERVERRLKYETLHD
SLTGLPNRTLLLQRLEQAMRRYADNPDEQFAVLFIDLDRFKVINDSVGHLVGDDLLFQVG
GRIRACLKTRDVVARLGGDEFAVLLEGIVETDKATLIAERIISELQTPFRLGTKEIFTSA
SIGIALARPHYRQPEELLRDADAAMYNAKDGGRHRAAMFDDRLRREALSLLDMESDLRHA
LSRNEFEPFYQPIVELADGRVTGYEALLRWHHPERGLLPPHDFLLIAEECGCAEAIDWQI
FEQVCTQAVRLIGTDGFISINVSGRHFRSADLDQRLLALFEQYAVPTRCIRIEVTEHALL
ENPTQVKQMLQNLRSHGVGIALDDFGTGYSSLSYLHQYPFETLKIDRSFITELPPDDTET
QGLALVRAIQVLADSLQMKVIAEGIEDESQRQALLRVGCRYGQGFLFAEAQPAATWLGAG
RPLLLN