Protein Info for LRK53_RS04535 in Rhodanobacter sp000427505 FW510-R12

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details amino acids 201 to 221 (21 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 275 to 298 (24 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 331 (310 residues), 42.1 bits, see alignment E=5.3e-15 PF00083: Sugar_tr" amino acids 25 to 152 (128 residues), 22.6 bits, see alignment E=4.8e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>LRK53_RS04535 MFS transporter (Rhodanobacter sp000427505 FW510-R12)
MTSYYIIRPVRDQLSGAVGSQSLPLFYGAVFVVMLLLTPLFGMLVARFRRRPLLAWSYGF
FIVCLLAFVPAFMAQERIGARELGVLFFVWVSVFNLFVVSLFWSFMADIFSSGQARRVFS
LIALGGMGGALFGPLVTKLLVRTIGVAPLLLVSALALSLSLALLLRLSTNHERQPGGHGD
EAIGGSLWAGIRELWSRPFLRYMALLMLFGDGIGTLAYALVADYAKAHFADAVSRTAFYN
DLDLATNLLGAVLQLSVTPWLLVRCGAGWGLVVPSLVNLALLAGVALIGGGSFAFFGYSV
PLLAVMQVITRGFAYGMTKPAVDALYTRVPRETRYKGKNFVETAVWRFGDLVVTSAVSGL
RLLGWGVAGLALAGTGVAALATVVARRAGWSPDLTPDDRAPADKDTQAPV