Protein Info for LRK53_RS04510 in Rhodanobacter sp000427505 FW510-R12

Annotation: energy transducer TonB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details PF03544: TonB_C" amino acids 266 to 342 (77 residues), 80.7 bits, see alignment E=4.4e-27 TIGR01352: TonB family C-terminal domain" amino acids 267 to 342 (76 residues), 69 bits, see alignment E=1.8e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>LRK53_RS04510 energy transducer TonB (Rhodanobacter sp000427505 FW510-R12)
MDTRYILDTRRRARGAVRPLVIAIIAIFVLLAVGAWFLIIKPHQDLIMADAGGHPSTPVS
TATQAAPPPANVAAMDLNQLLAEARTAMNEQRYLAPTGNNAFEFYLRVLEKDPGNKVASD
ALRETFPFAANSTEQAINSRDLGEAQRQIELLAKADPANFTLTILRSKLDAQRKTQDKQQ
QLAVGQEKTAQLAAQKAAAEKQAAEQLAEQQKAQLAAQQKTEQSRAAQQSGSAPAATGGN
ATAAADSGSNAAGGTTAAVLVKGAPARYPTAAMRARQEGWVVVSFTVDPDGTTSDVKVVE
SQPRHVFDRAAVDAVERYRFNPAMKDGVAVSSVKQQRIEFKL