Protein Info for LRK53_RS04445 in Rhodanobacter sp000427505 FW510-R12

Annotation: glycoside hydrolase family 99-like domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 686 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF14307: Glyco_tran_WbsX" amino acids 90 to 425 (336 residues), 440.3 bits, see alignment E=6.8e-136 PF05045: RgpF" amino acids 436 to 657 (222 residues), 118.6 bits, see alignment E=3.2e-38

Best Hits

KEGG orthology group: None (inferred from 61% identity to xal:XALc_2689)

Predicted SEED Role

"FIG01212400: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (686 amino acids)

>LRK53_RS04445 glycoside hydrolase family 99-like domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MPLRDFAKRCLFAVLRTGFRLTPMPGATRDRLRQRFLDRHAYLLPRGPRGQAAAAAQIEH
RSRRQAAGRAIGFVTRREGILPTPLPATLVAFYLPQFHPIPENDAWWGEGFTEWHNVTRA
LPQFEGHQQPRLPGELGFYDLRLADAMRKQMALAREYGIGAFCSYFYWFGGKTLLEQPLQ
QWLADSTLDLPLCLCWANENWSRRWDGRADDILIGQRHSAEDDLAFIAHVAPYLADPRYL
RVDGKPLLLVYRPGLLPDAAATARRWRDWCRANDIGEIHLAYVQSFDRVDPRAIGFDTAV
EFPPNNTTPAPITAHQRLLNPDYRGDVHDWRELARQSMSQPEPAYPRYPGVNPGWDNEPR
RSGGGRVFAHASPRGYRDWLRHAVGVAQRRFPAQPLVFVNAWNEWAEGAVLEPDSRLGHA
WLEATRTALQPVPTADARPCAVIHLWYPELLDELAAALHASGIDWRIVITTGHEREQAVR
ERVAQLGLAAEIEVFENRGRDILPFLHVANRLLDEGVTTVLKLHGKRSTHRQDGETWRRE
LLDKLLAPERAARIAAAMREDATLGLVHAEGHLQPLDYYWGANQANVDYLTRRLGIPAPD
VERDSFTAGSMLWLRPAALRPLLDAHLGVEEFEPEAGQLDGTLAHAVERVLTLAADAGGF
HTADAATLLGLAETRPQPYSYARRSG