Protein Info for LRK53_RS04405 in Rhodanobacter sp000427505 FW510-R12

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 PF13439: Glyco_transf_4" amino acids 24 to 186 (163 residues), 53.4 bits, see alignment E=8.4e-18 PF13579: Glyco_trans_4_4" amino acids 24 to 180 (157 residues), 62.5 bits, see alignment E=1.6e-20 PF00534: Glycos_transf_1" amino acids 208 to 368 (161 residues), 51.2 bits, see alignment E=2.7e-17 PF13692: Glyco_trans_1_4" amino acids 211 to 357 (147 residues), 63.3 bits, see alignment E=7.7e-21 PF13524: Glyco_trans_1_2" amino acids 241 to 385 (145 residues), 32 bits, see alignment E=2.8e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (397 amino acids)

>LRK53_RS04405 glycosyltransferase (Rhodanobacter sp000427505 FW510-R12)
MKILWCHEVSYLDKPVYEYQDFPERLAARGHDVEVIDFSESGEGIANRMPVSRTGEGTVM
LTTIPHDNRPGLKYIQARGQFRRMLIERLRRGDIDAVFVYSIFINGTQTVRLSRKFGVPV
VYRVLDAYHRLRPGFLAQTILRLGERFIYRRADRVLVTNEQMGQYVSQIAGTDVSARTVV
VDHGVDSIHFAPRSPDPELMLRYDLSGHDTIALFLGTTYAFSGLANLVRRMPTALQQCSS
LKLVIVGGGEQDQELASLVEALGLKGRVVLTGMVPYQEVPRYLSLATLALNPFELNDITR
DIIPIKILQYQAAALPVLSTPLPDLLRKHSAGTSGVEYSDSDNPDVFVSRMAELLRDTDH
LRSIGRRGLDFVTEHFSVDRAVDHIETTFKQIRERVA