Protein Info for LRK53_RS04400 in Rhodanobacter sp000427505 FW510-R12

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 884 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 185 to 208 (24 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 355 to 375 (21 residues), see Phobius details amino acids 380 to 400 (21 residues), see Phobius details amino acids 406 to 423 (18 residues), see Phobius details amino acids 428 to 446 (19 residues), see Phobius details amino acids 452 to 469 (18 residues), see Phobius details amino acids 481 to 503 (23 residues), see Phobius details amino acids 559 to 578 (20 residues), see Phobius details amino acids 584 to 602 (19 residues), see Phobius details amino acids 623 to 642 (20 residues), see Phobius details amino acids 654 to 675 (22 residues), see Phobius details amino acids 681 to 703 (23 residues), see Phobius details amino acids 709 to 729 (21 residues), see Phobius details PF24677: DUF7657" amino acids 249 to 642 (394 residues), 337.1 bits, see alignment E=1.3e-104 PF24672: DUF7654" amino acids 735 to 858 (124 residues), 74.6 bits, see alignment E=6.8e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (884 amino acids)

>LRK53_RS04400 hypothetical protein (Rhodanobacter sp000427505 FW510-R12)
MNPVLFSGRDRSRSRLISRRWFRTLVAVLFALAMLQLFGWTTPVVQVVVEMQSRAGADGE
IFYARAGQEYQPDRRVEFAINPDGEWHTYHVKIPETRGLSRVRVDPGSTSGIVGIRRVAV
EVSGPDRSVNLSGGRLSTAMELTNDLRAEVGDLADLRFMAQAPDPYVSFRLPAGTGVLSH
GGQFVNWLVTAIAAALLWLLLAELAWPLFMRRVAPHLSLPRAFHRLAAYSSDPGTLIVAP
RALALAIGVLCASVLYIVLNLHQSSIGVWEELFPAKPANQLVDLGTPKHIRSDEWNTQTP
WVLNEVLRGKRTHNLSIGGEKAPLLAAVPVLDFSAIAQAQFYGFYLFDPATGFSWWWAYK
TFGLALSFFWLFLLLTRGNIAAAALGTMWVYGSSFTQWWLSSNLPELLIAFALATIGSMY
LLFARRRIMIGAGAALVAYSVLNLLLHLYPPFIVPLAYLGAAILAGLMLEPGRLAQIRER
LGWRASCLIAAVLVVSLIGGNYLREAMPTMVAMADTIYPGHRVSGGGDFPLTRLLYGFFE
VFRVGEKNVPLPPANASEASSFIILVPLLLLSLPFVAFVKRKNALLTALVLYCLVVGLWI
SVPLPRVVETAMQVIGWSWSPPLRSVLGLGMGSIVATTVLFSRVHDGTIELHPAAARGMV
PILVLSCLLLFGWVLHGMDPVFFTPALVLMASAVVAVMTAGIVFGRTVLFAAGLVVAVAP
ALMVNPLVSGLSAIEDKPVLLAAKHQGGAVNDRWAVVGAFVFSQGLKAQGLEVITGSQMI
PDRKLSHLLDPQEKYKNIWNRYAHVVLRSNPEKISPEYELGTPDLYVIELNVCGGAMRQL
GVTNIAYTDPVPASDLKCLIPLDAPADSGVRLFRLSSQSAAATP