Protein Info for LRK53_RS04375 in Rhodanobacter sp000427505 FW510-R12

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 101 to 125 (25 residues), see Phobius details amino acids 133 to 161 (29 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 219 to 243 (25 residues), see Phobius details PF01061: ABC2_membrane" amino acids 3 to 211 (209 residues), 89.4 bits, see alignment E=1.3e-29

Best Hits

KEGG orthology group: K09690, lipopolysaccharide transport system permease protein (inferred from 49% identity to nmu:Nmul_A2397)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>LRK53_RS04375 ABC transporter permease (Rhodanobacter sp000427505 FW510-R12)
MTWELSKREVLGRYRGASFGLAWSVISPFLMLGVYAFAFGTVMKSRWPHQTGGDHPYAVI
LFVGLIVHGFLAECLTRAPTLVVGNPNFVKRVVFPLDVLPWPMMFSALFHALINSVVLAV
LILVLEHQLRPTLLLLPLIFVPLMLLTVGLSWFLAAVGVYFRDISQVMPVVATAMLFLSS
AIIPVSILSPPLQTLFHLNPLTFFIDEARMVVLMGELPNWGGLALATVGGLLTAWLGHAW
FVATQRGFADVL