Protein Info for LRK53_RS04025 in Rhodanobacter sp000427505 FW510-R12

Annotation: sulfotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 PF14559: TPR_19" amino acids 24 to 77 (54 residues), 34.4 bits, see alignment 4.7e-12 PF13469: Sulfotransfer_3" amino acids 290 to 468 (179 residues), 136.6 bits, see alignment E=3.2e-43 PF00685: Sulfotransfer_1" amino acids 290 to 470 (181 residues), 57 bits, see alignment E=4e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (518 amino acids)

>LRK53_RS04025 sulfotransferase (Rhodanobacter sp000427505 FW510-R12)
MTPTTPALPDEQLLLQAAQAQILRGDVAAAANTLEAAVAAHPGSDELALALAGLAIQRGD
RPSAERRLRGILQRTPDHLPAAFVLARLLREQGRMVAAGEVLTSASTASTARTASLEQRI
TAVELLDDCGRQAQALQLCTDAFARGLDDPRLRAHAGALASQLGRFDEARLHQQAALAGS
PLALEWHVPLGLAGLQRYRDRRHPDLALFEHHLARNDLSPHARSGLLFALGKACDDLGEH
ARAAAAWAEANRLVRERQPWNRKAWRRSVELRLTRPAPPVQPAGDHAWTPVFIVGMPRSG
STLLAEQLAQHPAVRHRGELPWLPTLAARLDAIASERERAAQMPLAATAYAAQLVQDDAP
ARWYIDKQPHNDMHVDLILALFPQARVIHCRRNARDNALSLWMQSFHPGTQDFAGDFADI
AAVIHGTRRLMAHWQRRYPTAVREVRYEDLVADPASCIGALADWLGLPAAIPPMAPGQER
AINTASLWQARQPVHSRSVQRWRAYATLLPELARMADD