Protein Info for LRK53_RS03615 in Rhodanobacter sp000427505 FW510-R12

Annotation: GldG family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 424 to 446 (23 residues), see Phobius details PF23357: DUF7088" amino acids 40 to 108 (69 residues), 34.7 bits, see alignment E=2.5e-12 PF09822: ABC_transp_aux" amino acids 149 to 381 (233 residues), 84.8 bits, see alignment E=1e-27 PF14258: DUF4350" amino acids 175 to 391 (217 residues), 32.3 bits, see alignment E=1.9e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (451 amino acids)

>LRK53_RS03615 GldG family protein (Rhodanobacter sp000427505 FW510-R12)
MHHLFRRLDGWLFALLLVLAVAAVGYLSTRYAHQADWTANGRTSLSPESRAVLARLDGPV
EITSYANPQGNLRQTVAGFLQRYQTVKPDLTLRFVDPQLDPAKMRELGITVDGALILHYK
DREQRLDELSERSLTNALERLLRGSDRIVAFVTGDGERRADGQANADLGTFITQLEARGM
RAVPLNFAQVSAVPEHTDLVVLASPSLALPPGAVQALVAYVQNGGNLLWLSEPTNDDLGL
APLAAALGVRVLPGVLVDGSGAALGLHDPRLIALGSYPPQAITRGFTLTTLFPQASALAQ
LAQGDWAVKPFLRSGAQSWTEFQPIDNAKPSDIRYDADAGELKGPLDFGFALSRLSPSPG
KSEQRAVVIGDGDFLSNSFLGNGGNRALGERVFDWLLGDDKLIQMPPRGAPDRLLKISQA
ELNALSIGFLVVLPLLLLLAGGLIAWRRRRR