Protein Info for LRK53_RS03440 in Rhodanobacter sp000427505 FW510-R12

Annotation: FUSC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 709 transmembrane" amino acids 28 to 49 (22 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 129 to 148 (20 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 383 to 405 (23 residues), see Phobius details amino acids 411 to 428 (18 residues), see Phobius details amino acids 439 to 457 (19 residues), see Phobius details amino acids 463 to 480 (18 residues), see Phobius details amino acids 487 to 506 (20 residues), see Phobius details amino acids 519 to 543 (25 residues), see Phobius details PF04632: FUSC" amino acids 29 to 694 (666 residues), 572.5 bits, see alignment E=2.2e-175 PF06081: ArAE_1" amino acids 32 to 116 (85 residues), 22.7 bits, see alignment E=1.4e-08 PF13515: FUSC_2" amino acids 41 to 169 (129 residues), 46.5 bits, see alignment E=6.1e-16

Best Hits

KEGG orthology group: None (inferred from 55% identity to tin:Tint_0227)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (709 amino acids)

>LRK53_RS03440 FUSC family protein (Rhodanobacter sp000427505 FW510-R12)
MSAAAVESAQRPSRQPWLADFLTGEGQSWIFVLKAALALYVATWLAMWLQLEKPSTTMIT
VLLLMHPQSGMVLAKSFYRAIGTLAGSVFGVLLMALFPQQRELFLLSLSLWVALCAGGAT
LYRNFMSYGFMLAGYSAAIVTMPAITNPLNVFDSAVMRVSEVLLGVIVAGTVSDLVLPGR
LREVLRRSAREQFGHFLDFARNSTGGAIARADMEQAYLRFVRAAVQLENLRAAVIFEDPE
ARARSSRIRLINQLYMAATTTFQSVHHLINRLQRSGRADVADALVALYQPIGQALSPEPA
QQHDPAVLAPRLQACERSVPALAQQLRATLPQVAQTDFDTGAILLQRFADELRDFTLVEN
SLRAKRLRGNVERVQFRRGNDHVGAGLAVLRTFFTMTALSAFWLASGWPHGASAMLIATI
FAGLLSMAPNPVSTAFRTLFAQGLGMAAAFVVTFGLLPSCDGYAMFVMATLPLLIPGYYV
QSKPAVSTTGVGYGIGFVSSMLLTNQMSYDPAFFLNEAIAQLAGFALSAVAFMVIPAITG
SGWQRARQLRQLRRQVVQAASAPLAGLAYRFESVNRDLFLQVVTYTRPDSRESRDLLAWA
LTVHECGRGLIELRQDMAGSLLPATVEQLAQQAVQAVARLFEAPDHVRWQQAEQAVAAAI
MGILRNQPGAQSGSRRMLLHLHQLRSVLRDDESALAPYMPTAAEPAHAS