Protein Info for LRK53_RS03355 in Rhodanobacter sp000427505 FW510-R12

Annotation: ribonucleotide-diphosphate reductase subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF03477: ATP-cone
  • amino acids 39 to 118 (80 residues), 37 bits, E=4.1e-13
• PF00268: Ribonuc_red_sm
  • amino acids 196 to 365 (170 residues), 135.6 bits, E=2.3e-43

Predicted SEED Role

"Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)" in subsystem Ribonucleotide reduction (EC 1.17.4.1)

MetaCyc Pathways

• superpathway of histidine, purine, and pyrimidine biosynthesis (44/46 steps found)
• superpathway of purine nucleotides de novo biosynthesis I (21/21 steps found)
• superpathway of purine nucleotides de novo biosynthesis II (24/26 steps found)
• superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (18/18 steps found)
• superpathway of purine nucleotide salvage (14/14 steps found)
• pyrimidine deoxyribonucleotides de novo biosynthesis I (9/9 steps found)
• superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) (12/14 steps found)
• superpathway of guanosine nucleotides de novo biosynthesis I (6/6 steps found)
• pyrimidine deoxyribonucleotides de novo biosynthesis III (8/9 steps found)
• superpathway of adenosine nucleotides de novo biosynthesis I (5/5 steps found)
• superpathway of guanosine nucleotides de novo biosynthesis II (7/8 steps found)
• pyrimidine deoxyribonucleotides de novo biosynthesis IV (6/7 steps found)
• superpathway of adenosine nucleotides de novo biosynthesis II (6/7 steps found)
• adenosine deoxyribonucleotides de novo biosynthesis I (2/2 steps found)
• guanosine deoxyribonucleotides de novo biosynthesis I (2/2 steps found)
• pyrimidine deoxyribonucleotides biosynthesis from CTP (6/8 steps found)
• adenosine deoxyribonucleotides de novo biosynthesis II (3/4 steps found)
• guanosine deoxyribonucleotides de novo biosynthesis II (3/4 steps found)

KEGG Metabolic Maps

• Glutathione metabolism
• Purine metabolism
• Pyrimidine metabolism

Isozymes

Compare fitness of predicted isozymes for: 1.17.4.1

Use Curated BLAST to search for 1.17.4.1

Protein Sequence (402 amino acids)

>LRK53_RS03355 ribonucleotide-diphosphate reductase subunit beta (Rhodanobacter sp000427505 FW510-R12)
MQALDTAERERAVAPAESPVASEADTTFALTPPHSAASMHVTKRNGGQEAVDVNKIVRAV
TRSAEGLHGVDPLRVVLKTIGGLYDGATTAELDQLSIRTAAALTAEEPEYGQLAARLLGA
YIDKEVSGQEIQSYSQSIARGAELGILNDRLRDFVGANARKLNDAIDPLATRRFEYFGLR
TVYDRYLLRHPQKRLAIETIPSIRQKGAFCFKWIDSIQDLRRLQTREHRRQFLLNLICFA
ACIEGLFFYAAFAYVYYLRSRGLLHGLAAGTNWVFRDESGHMAFVFEVVRTVRAQEPELF
DDAMRAQVEAMMEEAIACETQFAKDVLSGGVAGMSVKDMRQYLEYCADQRLAQLDLPKQY
GAKNPFDFMDLQDVQELANFFERRVSAYQVGVQGEVAFDLAF