Protein Info for LRK53_RS03350 in Rhodanobacter sp000427505 FW510-R12

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1081 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 35 to 113 (79 residues), 67.4 bits, see alignment 6e-23

Best Hits

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1081 amino acids)

>LRK53_RS03350 TonB-dependent receptor (Rhodanobacter sp000427505 FW510-R12)
MASMIRVRTLPLAVASLLAISPVFAQNITTSGAIGRVLDAQGKPVADATVTIVHVPSGTT
KAVSTDADGRYAAQGLRAGGPYTITASRPGEAGAEQDNVYLQLGQPSAINLALGGGSESA
RTLGAVTVSASTLAQTFTSENKGLSTNISQRQLQATPQGNRSIDDVVRLDPRVSVTDQGT
GAISAAGMNNRYNNIAVDGVTQGDPFGLNANGLPYQKSPISPETIAEYNISTANYDVVSD
VVGADVNAVTKSGTNDFHGAVYYSYRNANHLVGDAGWLPGGNPGYHYKGYRKDATYGFNV
GGPIVKDKLFFFVSAEHEKTTGIGADSANGLDDSLGNGPSTSNKVSPGDLQKIIDTAKQL
GLTPGGFGGPTGLTYDDKRYLGKIDWNISNNHRASFTYQRTKEMLPAVGGNSPSSVGLTS
YTYTKAITTDNYVAHVFDDWTDNFSTEAKVGYQKYVQDTTAPFQQPAVNVNLSPTGKGPS
VNLGEERYRHYNHIDTKKTSVFLAGTYVLGDHAVKGGIDYQRNKINNLFGQAEFGVYTFW
GLTNFAAGNYNKYELYHPAPGYALNDIAGKWTYSQYSPFLQDTWQVNDALSVQYGVRVDI
PHTSDKPVYNAAFAQAFGFANNYTVGSSNRIVEPRLSFNYLFDSSYKTQLRGGVGLFQTN
PPTVWMTNPFQNNGVTLRNYTSFNPASAPFSPDPLHQNIPAGGGAGSIDTIDPNFRLPSV
WKMSLALDRELPWWGMLASAEYQHIKVRDGILYEAVNYGDPTGTLPDGRLQFWKTPGEAP
TSKDALANQNRAFSTASTLLTNTHRGKSDSLTLALAKPFSDSWSGNVSLTFNHATDVDPG
TDTIAYNGYQRVARLNPNSNLLATSNYNVAKVLKASLTWQHAFFGDYQTQVSAFYSGHTG
LPYTWVFQNDANGDSVSGWDPAYIPSANDPKVAYAPGTSQQVIDQFQAFLASEKYLKDHR
GQIAGRNGTRTAWVNELDMSFSQEVPGIFKGNKGELRLDVYNMLNLLNKGWGQQRNTGIY
PTRTLASYAGVNAQGQYVYTLPTDKSGNYQPQQLQTYDGGFYDPSRVVSRWSAMLTLRYK
F