Protein Info for LRK53_RS02595 in Rhodanobacter sp000427505 FW510-R12

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1079 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 336 to 353 (18 residues), see Phobius details amino acids 360 to 382 (23 residues), see Phobius details amino acids 389 to 411 (23 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 490 (28 residues), see Phobius details amino acids 534 to 553 (20 residues), see Phobius details amino acids 900 to 918 (19 residues), see Phobius details amino acids 938 to 963 (26 residues), see Phobius details amino acids 999 to 1018 (20 residues), see Phobius details amino acids 1028 to 1054 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1054 (1051 residues), 1017.3 bits, see alignment E=0 PF03176: MMPL" amino acids 294 to 520 (227 residues), 38.6 bits, see alignment E=6.5e-14 amino acids 775 to 1073 (299 residues), 22.6 bits, see alignment E=5e-09

Best Hits

KEGG orthology group: K07788, RND superfamily, multidrug transport protein MdtB (inferred from 81% identity to smt:Smal_3690)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1079 amino acids)

>LRK53_RS02595 efflux RND transporter permease subunit (Rhodanobacter sp000427505 FW510-R12)
MGFSTLFIRRPIATSLLMVAVLLLGILGYRQLPVSALPEIEAPSLVVSTQYPGASASTMA
ALITTPLERNLGQISGLTMMSSDSSAGLSTIILQFSMDRDIDIAAQDVQAAINQAKGTLP
GNLPYPPVYNRVNPADAPILTLKLTSDSRQLREVNDLADSIIAQKLSQVQGVGLVSIAGN
VRPAVRVQVNPAQLSNLGLTMEDVRSALTQANVNAPKGTLNGKTQSYSIGTNDQLSDAAE
YKNTIISYKNNSPVRLSDVANVVDGVENDQLAAWANGQPAVLLDVRRQPGANIVQTVEQI
RRVLPELRSALPADVHLDVFADRTVTIRASVRDVEFTLILTVFLVIGVIFVFLRRLWATI
IPSVAVPLSLMGTFGVMAFTGMSLDNLSLMALTVATGFVVDDAIVMIENIVRYIEQGKDG
KEAAEVGAKEIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLTIAVTISMLVSLT
LTPMMCAYLLKPDQLPEGDDAHERHAAAGKRTVWSRTVSLYERSLDWVLDHQRLTMLVAG
AAVVLTVFLYIVIPKGLLPEQDTGLITGVVQADDNIAFPQMEDRTKAVAEALRKDPAVAG
VAAFIGAGTINPTLNQGQLSIVLKDRGDRDGLDELLPRLQHAVAGIPGVALYLKPVQDVT
LDSRVAATEYQYSLSAVKSSELAGYANQMTQAMRQRPELADVDNNLADNGNALKLTIDRE
KASRLGVPVQTIDDTLYDAFGQRQISTIFTQLNQYRVVLEVAPEFRTSDDLLTKLTVRGN
GNGALTGSTATSFGQLKSSNSATPSGIGNTGNIGFEIGAGGSIPLSSLVSAQMTSAPLVV
SHQQQLPAVTLAFNVAPGYSLSDAVAAIHQVEAQLNFPPQIRGEFVGKAAEFASSLGDEV
LLLLAAIIVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALILCGMSLSVDGIVGIVLL
IGIVKKNAIMMIDFAIEARRTGLDARDAIRRACLLRFRPIMMTTAAAMLGALPLALGNGI
GAELRRPLGVSIVGGLLLSQLVTLYTTPVIYLYMERFSDWLAERRERRALAHAQVSRAA