Protein Info for LRK53_RS02510 in Rhodanobacter sp000427505 FW510-R12

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 transmembrane" amino acids 22 to 45 (24 residues), see Phobius details amino acids 51 to 76 (26 residues), see Phobius details amino acids 98 to 124 (27 residues), see Phobius details amino acids 135 to 167 (33 residues), see Phobius details amino acids 191 to 215 (25 residues), see Phobius details amino acids 247 to 274 (28 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>LRK53_RS02510 hypothetical protein (Rhodanobacter sp000427505 FW510-R12)
MTEKATGNIGLLMRCYEALHNWQALAMLAGGVVIGLGLAVAAGALAAKMGVIVGVLLMLI
ALLVYLAGINGAGLLLVDQADGRPGRGFAAAFFGGLGATLNVLLALLLLALGLLLVFVAL
YLLALLGRIPGIGPLFAFLLAGPGAIVLLFCYGVLAIGMPLLLVAVWRGEGVLGSLGRAV
DIVLKRPLDALLHFVLLWLIVAPVAIFVLALLAVSAGASMSMYSHGFGDYGYGAGLEYML
MSSMQGLGAASVSVGIVFAVVVALFALVYLFGYIMVYDSLNAGLASTAESRLRGGFNQLK
QKVEQHRPQATAARTAPVCKGCGARLIPGDQFCGECGQRT