Protein Info for LRK53_RS02470 in Rhodanobacter sp000427505 FW510-R12

Annotation: ParA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 PF10609: ParA" amino acids 2 to 46 (45 residues), 38.3 bits, see alignment 3.6e-13 PF13614: AAA_31" amino acids 3 to 177 (175 residues), 213 bits, see alignment E=1.1e-66 PF09140: MipZ" amino acids 4 to 154 (151 residues), 47.6 bits, see alignment E=5e-16 PF06564: CBP_BcsQ" amino acids 4 to 245 (242 residues), 51.1 bits, see alignment E=4.9e-17 PF01656: CbiA" amino acids 5 to 228 (224 residues), 106 bits, see alignment E=4.9e-34 PF02374: ArsA_ATPase" amino acids 10 to 44 (35 residues), 25.4 bits, see alignment 2.7e-09 PF00142: Fer4_NifH" amino acids 10 to 51 (42 residues), 27.7 bits, see alignment 6.6e-10

Best Hits

Swiss-Prot: 60% identical to Y002_PSEPK: Uncharacterized protein PP_0002 (PP_0002) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K03496, chromosome partitioning protein (inferred from 67% identity to psu:Psesu_2851)

Predicted SEED Role

"Chromosome (plasmid) partitioning protein ParA" in subsystem Bacterial Cytoskeleton or Plasmid replication or Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (290 amino acids)

>LRK53_RS02470 ParA family protein (Rhodanobacter sp000427505 FW510-R12)
MARIIAVANQKGGVGKTTTAVNLAAALAAAKRRVLLVDFDPQGNATMASGVNKRDIKASG
CEVLLEEVEIAAAIVPTEAHYDLLPGNGDLTAAELKLMDALAREHRLKEVLAKIAAEYHT
ILIDCPPSLNLLTLNALTAADGVLIPVQCEYFALEGLSSLLDTIKAVRHRLNPQLEIDGL
LRTMYDVRNNLGNEVSAQLTQHFGDKVLRSIIPRNVRLAEAPSHGQPIHLYDRSSRGAIA
YIGLAGEVIRRERGLPRGAAHAVDPVDDIEPPVHGDSGPTLKAPAANHQD