Protein Info for LRK53_RS02430 in Rhodanobacter sp000427505 FW510-R12

Annotation: Tat pathway signal protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 77 to 94 (18 residues), see Phobius details PF10091: Glycoamylase" amino acids 218 to 464 (247 residues), 273.3 bits, see alignment E=7.5e-86

Best Hits

KEGG orthology group: None (inferred from 58% identity to sml:Smlt3253)

Predicted SEED Role

"Hypothetical protein USSDB1A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (487 amino acids)

>LRK53_RS02430 Tat pathway signal protein (Rhodanobacter sp000427505 FW510-R12)
MSRSFRILRAIALTALLAFGAGWQTPATARQPNLGYADLPARQQALVDDLQRRSFDWFWQ
SGNPQNGLLPDSWPGQSFSSIAAVGFGLTAYGIGVERHYITRQQAVERTLATLRFFADAP
QNGSEDDASGYHGFFYHFLDMHSGKRFARWTELSSVDTTLLLGGVLFAQSYYDRDTPQEA
EIRQLADTIYRRVDWPWMQPRKPLISMGWTPGGQFIPSDWKGYNEGMLVYLLALGSPTHP
VGPEAWTAWLSTNHLTWGSFQGQTFLNFAPMFGHQYSQSWVDFRGIRDAWSREHGLDYFE
NSRRATYAQRSYAIANPGHWTGYGANVWGLTASNGPGGLVVKSAEGERTFHGYTARGVGL
DDISDDGTIAPTAAAGSIAFAPELVIPALATMQQRYGKYIYNQYGFVDAFNLSFHTPTTL
RTGKLVPGVGWVDTLQLGIDQGPIVLMIENWRNGFVWKVMKKNPYIRKGLERAGFEGGWL
GAGAAEK