Protein Info for LRK53_RS02010 in Rhodanobacter sp000427505 FW510-R12

Annotation: DNA repair protein RadC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 TIGR00608: DNA repair protein RadC" amino acids 23 to 161 (139 residues), 134.4 bits, see alignment E=2.5e-43 PF04002: RadC" amino acids 43 to 160 (118 residues), 141 bits, see alignment E=8.9e-46

Best Hits

Swiss-Prot: 50% identical to Y1786_VIBCH: UPF0758 protein VC_1786 (VC_1786) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K03630, DNA repair protein RadC (inferred from 54% identity to shm:Shewmr7_1776)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (161 amino acids)

>LRK53_RS02010 DNA repair protein RadC (Rhodanobacter sp000427505 FW510-R12)
MHIAQSLTYTRYKLTGETTEQDVLAAAEAILKSRLERQGSIGTPMDASDFLRMRLGALLH
EEFHVLWLDNRHRILDCQKLFTGTVDGASVHPREVVRAALAINASAAILAHNHPSGLAEP
SAADRALTNELRDALRLIGVRILDHIVVGSECVSMAERGLL