Protein Info for LRK53_RS02005 in Rhodanobacter sp000427505 FW510-R12

Annotation: DISARM system phospholipase D-like protein DrmC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 873 transmembrane" amino acids 741 to 758 (18 residues), see Phobius details PF09369: MZB" amino acids 484 to 566 (83 residues), 35.4 bits, see alignment E=1.4e-12 PF13091: PLDc_2" amino acids 730 to 863 (134 residues), 57.5 bits, see alignment E=1.3e-19

Best Hits

Predicted SEED Role

"FIG00732917: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (873 amino acids)

>LRK53_RS02005 DISARM system phospholipase D-like protein DrmC (Rhodanobacter sp000427505 FW510-R12)
MTTSNKTPVGEVRPSQLLWTYGPGALIDLPSLSVVTLGIDRWEKDRCQPIQEARLLAAVR
KVLGSQVENLRMPPFQKSELLDVWSAEANIGVPVRPFPRWMRCVKCGLLSPFDAGLFEIK
ENRFRPERTRFVHKSCRGSKGDQPAKDADAVPARFLLACRDGHLDDFPWHYFVHGGNSSC
KGKLRFFESGASLQTENLWAKCDACGASRSMAHAFGKAGKENLPGCRGRHPHLDHFDNEC
DEEARAVLLGATNSWFPITLSALAIPQANDPLSQLVQDGWEFFEELESEAEVSVTVKALR
KTGALPGIDKYPAASIWSAIEAHRAGGGQADVGEADIKGPEWDVLTETNPPTDYPHFMSK
KVDTPPQFASHISRVLLLERLREVNALLGFTRVEAPEETGDPNERPQMASLSRSKPEWVP
ANQVHGEGIFIQFDEQALMDWEVLPAVKKVDLMLRGGHKGWRNSRHLDPDDGYPGIRYAM
LHTLSHLLIRELALECGYNAASIRERIYANTEDDNPQAGILIYTAAADSDGTLGGLVDLG
KPENLGRLLQQALNRSKICSSDPLCSEHSPEKDRSFMRRPATLVAWWPRHLANAAIATWI
GHCWFLPWNASTQPSSGACDMEKLLDAIAVLVCLVSPEKIDALAVRVRRDGTSKTAGSLS
DVVSTPAAAQVVDQLIDAWRATSVSAEELALMLLAACRVSTKVAAEQSTELVWTGPTTPV
VPARRTEQALLQVINAAEHTLFIVSFVAYDVAVIVKALNAADARGVRISMLLESSQGHGG
SISIDVIGRMRALVPAAKIYAWIEKVGVFLGGRVHAKIAVADGRACFITSGNLTGHAMEK
NMEAGVLISGGSIPKSLEVHMQTLVDMKIVSPV