Protein Info for LRK53_RS02000 in Rhodanobacter sp000427505 FW510-R12

Annotation: DISARM system helicase DrmA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

KEGG orthology group: None (inferred from 89% identity to ajs:Ajs_2203)

Predicted SEED Role

"Superfamily II DNA and RNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1341 amino acids)

>LRK53_RS02000 DISARM system helicase DrmA (Rhodanobacter sp000427505 FW510-R12)
MSDKLNINAWIAVDHGVSTPPRIAPYVLVLKGERSSYQAIAEDDWVLVLDTSGAVARVGR
VLRVRSDLDTTTLYFDRVFAVGEPTSLAVTSFTPPAPGSIGRIQWADFVEALSNVLGKTI
VEVPTVGSDARSSHYQQELAYIRELLQLAVVDDLLGPAGGPHERIVDMGVRDRYLVGKLA
PREAAQGGIEGLEGPLADDEAEEPADQKVPGQHEPGAEFGTATGRVEPESDSNDEVDAAS
NQSLVPSSIGMTFCVDGDVDRIEVAVCWGRYERSNEHEIFRTRKNKETGAEELSKAKVWQ
RIPCGGKIVLPLTEGVIPHQAPDKDYPEVRVQGSVRAKNANGDRLVTLFLVNAQEEPDTN
RDIAWVFQPELIVRSAAEASKRDIFRRRPVLGTDGTDPERESLEMIYRNRVEFAVGHGVA
VHAQTAADVRLATEVRTAVMPEYEVQVTETPGLDPGDRSTMKDMVSSGLLDMQRLATLDI
DPLVDALNLLTKDYAAWIGEQRARVGVDVLGCDAQAQQAMDRCNEIHSRLQQGIDTLRTN
EKALAAFRFANQAMATQRVRSQYALEIRRGRDVTVDQFDVLKNRSWRPFQLAFLLLSIPS
LADPSHPDRVQPVEAHADLLWFPTGGGKTEAYLGVAAFTMAIRRLQGNLGGYDGSRGLAV
IMRYTLRLLTLQQFQRATALICAMEVLRREALAKGDESLGMEPFTIGLWVGNKVTPGTTE
DSHRAIEDIRNPGKYNAGASSPAQLTSCPWCGSEVAPGRDIEVDKARGRTFVYCGDKKGR
CDFSKGKTSKLSHAGIPVLVVDEEIYHHPPTMMIATVDKFAMMAWRGQVRTLFGRVTQEC
ERHGLLWQGADCNGNHQAGKGLGATKVKNIRPIRPPDLIIQDEFHLISGPLGTMVGLYET
AVDDLCGWRLGEHTVKPKIIASTATVRKAREQVNNVFMRRVSVFPPHGLDVEDNYFSVQR
PIEEKPGRRYLGVCSPGSSRPAMLIRVYTAFLTAAQALFDHFGEPADPYMTMVGYFNSLR
ELGGMKRLAEDDVQTRSYRVQMSMVERPALAQRSISNIRELTSRVSSQDIPKYLDQLEVK
FKSEFDAATGTYVTKWQEGDTRAIDVVLATNMLSVGVDVNRLGLMAVNGQPKGTAEYIQA
TSRVGRSFPGLVCTVLTWARPRDLSHYETFEHYHATFYKHVEAQSVTPFSPRAMDRGLTG
SLLSLMRLENDAFSPNDGAGKLDRSDRSEITEAIDVLVKRAWNVSDLSSTKSLATQELKE
RADEWAKEVSVPGRTLAYEKRGAQAATTVALIKSPGIRAWDNWTVPMSMREVEPGVRLIM
NTSHITDAHDWKPRPAAKDED