Protein Info for LRK53_RS01990 in Rhodanobacter sp000427505 FW510-R12

Annotation: SAM-dependent DNA methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1425 PF20473: MmeI_Mtase" amino acids 582 to 694 (113 residues), 29.8 bits, see alignment E=3.5e-11 PF07669: Eco57I" amino acids 668 to 931 (264 residues), 54.2 bits, see alignment E=2e-18

Best Hits

Predicted SEED Role

"FIG00733046: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1425 amino acids)

>LRK53_RS01990 SAM-dependent DNA methyltransferase (Rhodanobacter sp000427505 FW510-R12)
MSANGPHHDWLAFIEISGPFLAVPVLKEAFPQGLEELDGLKRKRLRQAYEEWRDALETDD
PQFPELHTAWIDEVLSRGLEFDEDGKGDVLKRVDWCVANLNVGLPEHGVAVSPDLAVVDE
QRANKPLILIQTYGQDVDLDANLKRDGWAATPADRMVQLCRAAGCRLGLVTNGERWMLVD
APVGAVTTFASWYARIWGQEPITLQAFVHLLGIRRFFVDKAEQLPALFDRSLKYQDEVTD
ALGEQVRRAVEVLIQALDKADQDRDRELLRDVKESVLYEAALTVMMRLVFLLSAEERGLL
LLGDERYEANYALSTLRMQLRKESEEILERRWDAWSRLLAIFRAVFGGIEHENLRLPALG
GSLFDPDRFPFLEGRAKSSNWRTDAAKPLPIDNRSVLLLLEAIQQFQGRTLSYRALDVEQ
IGYVYEGLLERTVKRTVEVTLELDGTKSAKSPWVKLAELESARLDGTDHLAELLQERSGS
SASRVRNELAKPVDGMLADRLLAACSGDVGLRDRIKPYANLVRVDYRSYPLVYPAGAFIV
TTGSDRRESGTHYTPKSLTEAIVTETLTPIVYAGPAEGAPRERWLLKLPAELLDLKICDP
AMGSGAFLVQACRWLADRLVEAWVQAEAAGKTVGVDGEVLDVGGTKELLPGDIEARTVTA
RRLIAERCLYGVDLNPLAVELAKLSIWLVTLSKDRPFGFLDHNLRCGDSLLGIHRLDQLT
QLTMSPTGQGQLRLFGQNVERAVCEAIELRIRLREMPIRDIRDVEAMALLDADARRRLEV
SECIADALFGEVFASGGNGVALENTLAKLAIQAGQVIDGDRDVLVLMRRRSTVALSNDLP
ADKPARRPFHWPLAFPEVFNSPDGGFHAVIGNPPFLGGRRITYRHSEALLHHLKSWLHGA
AGTTDLCVYFLLRAAVVTGRSGFIGLVLSDIISQGESRVNGLDRLLSEGSSVYKCVPSMD
WPGQAGVKIALVCISKATWNAPVTIGEVTFDGTVNSYLQISDSGQEFTPLKLMQNDELCF
SGHYLMGQGFVLSSVERDRILGANKNNEEVIYPYIRGDDINNEPSQSSGTYAINFSMREL
AKCEDRYPECLRVIRELVKPERDIVKRKANRERWWRYAEARPGLEGKLSRLDRVIVQPFT
AKYIFPTFVPARSVFAHPLVVIVRPSFDVYGCLQSSIHEKWVWQNCSTSLDLLRYTATTV
LSTFPFPIESEDIGSVAKGYYEFRQFLIERYEIGLTKIYNKFHDIDNTSSDIVELRELHR
QLDISVAGAYGWQDVSLDHAFHETKQGVRFTISEPARIEVLRRLSELNRRRYEGEVTRGL
HTDAAPRASSRALRDGRAAKATSVQSLLDFEAGATTTNSSAPATPVLGFLRAHEGWHAKS
DILTATGISGGQWNAAIADLIGAGKIERRGEGRGAHYRVLTGEEK