Protein Info for LRK53_RS01705 in Rhodanobacter sp000427505 FW510-R12

Annotation: O-antigen ligase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 17 to 49 (33 residues), see Phobius details amino acids 62 to 82 (21 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 185 to 215 (31 residues), see Phobius details amino acids 226 to 246 (21 residues), see Phobius details amino acids 342 to 361 (20 residues), see Phobius details amino acids 372 to 390 (19 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details PF04932: Wzy_C" amino acids 188 to 351 (164 residues), 73.6 bits, see alignment E=7.5e-25

Best Hits

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (443 amino acids)

>LRK53_RS01705 O-antigen ligase family protein (Rhodanobacter sp000427505 FW510-R12)
MHSFTTSFKAALRSPLLPFWLVVALLPFGRSSELGTLLCLLGVIMLFARNPQALREHPGA
QLLLWLLAAYTGAALFSAVDAIRPGKSWGTVVALLRYAPLGLYACFAIRREEKLLALYVA
VAWVLALWCADAWLQALTGWSLGGHAEAERVSGIFGADNLKLGPTLAVLSPFALWAARRR
WGLPGLLLAFALILGPVLLAGSRAAWLSYALVALGFAWREARSPWRFAGFCAVAAVLLAL
AGGIAWKTSTRFHDRMERTLLVLHGTDQSLDTALSGRLDIWHASIKMFAAHPINGVGVRG
FRYAYPQYAPANDHFVATGEACGVGEGACHAHQLVLEILTETGTLGLALWLAAVALAWRA
WRRVGAAARARAFPVTLALGVMLFPLNTHLAFYSAWWGLLFAWLLGLWCASLFVTGIPAG
KEEPGIRAGLLKEARSLEARDGA