Protein Info for LRK53_RS01700 in Rhodanobacter sp000427505 FW510-R12

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 23 to 173 (151 residues), 99.7 bits, see alignment E=5.7e-32 PF13579: Glyco_trans_4_4" amino acids 23 to 170 (148 residues), 57.7 bits, see alignment E=5.8e-19 PF13477: Glyco_trans_4_2" amino acids 30 to 125 (96 residues), 26.9 bits, see alignment E=1.5e-09 PF20706: GT4-conflict" amino acids 172 to 324 (153 residues), 32.6 bits, see alignment E=1.3e-11 PF00534: Glycos_transf_1" amino acids 199 to 345 (147 residues), 65.3 bits, see alignment E=1.6e-21 PF13692: Glyco_trans_1_4" amino acids 203 to 345 (143 residues), 46.4 bits, see alignment E=1.5e-15

Best Hits

KEGG orthology group: None (inferred from 59% identity to psu:Psesu_0426)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>LRK53_RS01700 glycosyltransferase (Rhodanobacter sp000427505 FW510-R12)
MSSMVVPVKLLTVVQLIPALHSGGAERSALEIARGLVQAGHRSVVISAGGRLVAQLQAEG
SEHITLDLGRKSLGTLGRLGALRRALRELKPDIVHARSRLPAWMGWWALKGMTPRPHFVT
TVHGLNSPGRYSAILLRGERVIAVSQTLRDYVLSHYRWLEPGKVRVIPRGIDPLTFTYGH
RPDDAWQKAFFAEFPALAGAPLLTLPGRGTRLKGHHDAVELLADLKRRGIEARLLLLGVV
EPGREAYVAELRELIRVRGVASQVVLTPSRDDVRDIYAISALVLQLSNRPESFGRTVIEA
LSLCRPVLGYAHGGVGELLAELYPAGRVPPGDRERLVERAAELLRVAPPISPLQSYRLVD
MQQATLALYDEVTGG