Protein Info for LRK53_RS01665 in Rhodanobacter sp000427505 FW510-R12

Annotation: LTA synthase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 629 signal peptide" amino acids 12 to 13 (2 residues), see Phobius details amino acids 36 to 36 (1 residues), see Phobius details transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details amino acids 162 to 185 (24 residues), see Phobius details amino acids 197 to 218 (22 residues), see Phobius details PF00884: Sulfatase" amino acids 257 to 496 (240 residues), 120.7 bits, see alignment E=4e-39

Best Hits

Predicted SEED Role

"Capsular polysaccharide biosynthesis protein WcbQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (629 amino acids)

>LRK53_RS01665 LTA synthase family protein (Rhodanobacter sp000427505 FW510-R12)
MPLNSANPSARWRVIVLRAALLLLLVLAFVLLTGLLDGGVGVAPLRLFDQARVPLANAWP
GLLLAGILLAISRRALLSFALAFLLQGLLYAVNVLKVANLGTPLLPDDFRIVGQLHKGGM
HILSGYLPHSPWPYLGLLTAVALVVAAWRLEPPLFPRRTRGARLLGGGVLALALASILLG
LPAWAKVYNGRTLWLEPWSAISTTAHSGLVSTLMLFHLEYNKGERKPDRAAAARLIEQST
PALLQSMQASAAGSELPDIVVVQSESFFDPSIMRGYERSNFTPNLRRLAARGTSGKLHVP
TFGGGTIRTEFEVLTGLSLRYFDNLQFPYLQMSHKALPGLVRTLNRHGYRTTALHGNDPA
FWNRTTAFKAIGFDRFVSQSSFPPTATNDGQYMADSAMTDEIMVQLKDDGPPQFIFAISI
EAHGPYDVEPAQVAERDAIPVPEGISGQDKLELQTYLYHLKHADAELGRLAKLLAGRQRP
SVLLFYGDHLPALSNSYQTTGFVDGGDMLGQAGVWLLVDPKRPGKRSSVETASWLLPGKL
LAHVGIHDDPYFALTELVGPQLAALTEAPGAPPLPAGDAQQQLDQAMASIDQLRMKDKLD
NLLPQPAATATGVLAHRDAAQRPSSATIQ