Protein Info for LRK53_RS01610 in Rhodanobacter sp000427505 FW510-R12

Annotation: four helix bundle protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 106 PF05635: 23S_rRNA_IVP" amino acids 1 to 91 (91 residues), 105.1 bits, see alignment E=1.1e-34 TIGR02436: four helix bundle protein" amino acids 1 to 100 (100 residues), 110.7 bits, see alignment E=2.1e-36

Best Hits

KEGG orthology group: None (inferred from 65% identity to xcc:XCC0516)

Predicted SEED Role

"23Sr RNA gene"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (106 amino acids)

>LRK53_RS01610 four helix bundle protein (Rhodanobacter sp000427505 FW510-R12)
MDLVEAIYRISAGFPDSERFTLTSQLRRAAISIPSNIAEGAARRSTPEYLRFLSMARGSL
SELDTQLQIAERLAYVSGANDVTELTDRVFAKLNALIRSIEAKRGD