Protein Info for LRK53_RS01460 in Rhodanobacter sp000427505 FW510-R12

Annotation: DNA recombination protein RmuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF02646: RmuC" amino acids 177 to 474 (298 residues), 297.5 bits, see alignment E=4.6e-93

Best Hits

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 35% identity to dze:Dd1591_3916)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (509 amino acids)

>LRK53_RS01460 DNA recombination protein RmuC (Rhodanobacter sp000427505 FW510-R12)
MSATELLLTALVAVVLVVIALQVTVLVRGRDAEKTRSDAESRLRETSSQLAYAQAQAERA
VTMERELRAAQEDLSARRAELASMSSQHGAAARSLAAANEQIALLTATSRAFAEEKSALL
ESQARLEQEVKSARQREIDTSKLLTDAKEEMAKEFKLMASTLLEEKGARLNEQQKATLSN
LLGPFSKTLDDFKGKVEATREADLTAREGLIAQIRHLTELNQDIGAKAQSLTNALRGESK
TRGMWGEAVLQRILELAGLREGIEFRTQASHHTEEVDGRLIPDVVLDLPRERAIVIDAKV
SLIAYERFVSSADDDARAMALDDHSASIKRHIKDLSSKNYPSLYNLKSVDFTLLFVPIES
ALMAASEADPGLAQYALERHVALVSPNTLFTVLRTIEYIWRVDKTTRSMEEIVKRGGLMY
DAAVRFSEHVVSIGDALAKATVATQAAEKALVNPRSGLVRQAEQLRDLGIKPKRSMPKKL
SSAGDDLEPVENSSESGIDSTDLTREDDA