Protein Info for LRK53_RS01405 in Rhodanobacter sp000427505 FW510-R12

Annotation: fimbrial biogenesis outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 921 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF13954: PapC_N" amino acids 57 to 203 (147 residues), 158.5 bits, see alignment E=1.7e-50 PF00577: Usher" amino acids 218 to 813 (596 residues), 575.6 bits, see alignment E=2e-176 PF13953: PapC_C" amino acids 822 to 887 (66 residues), 57 bits, see alignment 2e-19

Best Hits

Predicted SEED Role

"type 1 fimbriae anchoring protein FimD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (921 amino acids)

>LRK53_RS01405 fimbrial biogenesis outer membrane usher protein (Rhodanobacter sp000427505 FW510-R12)
MSRPRASAPVAARRQLLSTLIGLALCGWGSHAVAATTAAGPNADASTPAVDAMDASFDRS
MLSGAGQNTTDLSRFERGNFVPAGTYSVDLYLNDRPVGRSDVRFAAASADASATPCVTRP
LLDKLGLHPADLSARTSAGLTDNKVCVDMASVIPGASMAFEMSDLRLDTSVPQAYLGQQA
RGYVDPKYWDSGVNAGLLNYNFNSYRTSSHGLSQTSSYLGLNAGLNLGRWHLRHNSSLSW
QFGGGARSGHHWQNIATYAQRDLPQLHAQLTLGDAWTSGEIFDSIGLRGVQIATDDRMLP
QSQRGYAPTVRGIADSNARVTVRQNGMLIYQTTVAPGPFVIDDLYATGYGGDIEVSVTEA
NGRVHTFSVPYASVPQLLRPGVTRFSVAAGQLRNATIEHQPNLVQATLQRGFSNLLTGYA
GAAASPGYGALLLGGALNTRYGALAMDITSARTRIPGLDTLSGRSVRLSYSKILAQTGTS
LTVAAYRYSTSGFLALGDAARARDYARRGLPVFASGPARPLTINGMPVSDLLTPAQQAAL
AGVDYRDYLVPNGVDRQRNSFSLTLSQRLGSRGGSLYVNGSVRDYWNRGGTDTQFQLGYD
NSIGRVNYNLSAGRERDLFGRSDNRYMVNLTIPLGNGSHSPIFTGSLSRDGNGGMQEQAT
LGGNAGADDRFYYGATATHDSGPSATGSTASVNAGYRGSHAQLNANFGAGSGYSQASLNV
AGGIVAHPGGVTFGQPLGDTVAIVQVPDAEGARVGNATGVRIDHTGYALVPYLSPYVLDT
IEIDPAGLPLDVQLDNTSTQVAPRAGAVVMVKFKSQSGRFMLVRAHQADGTLLPFGAEVE
DGQDQVIGIVGQAGHIMMRASREAGRATVTWQDAGHERRCSFTYHVPAARGEGVGRYAVQ
DAVCSESPATGPAAAFESTPP