Protein Info for LRK53_RS01145 in Rhodanobacter sp000427505 FW510-R12

Annotation: transglycosylase SLT domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF14718: SLT_L" amino acids 409 to 468 (60 residues), 51.6 bits, see alignment 8.6e-18 PF01464: SLT" amino acids 489 to 598 (110 residues), 93.9 bits, see alignment E=5.2e-31

Best Hits

KEGG orthology group: K08309, soluble lytic murein transglycosylase [EC: 3.2.1.-] (inferred from 42% identity to xcb:XC_0758)

Predicted SEED Role

"Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>LRK53_RS01145 transglycosylase SLT domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MSVFLSPRRILLVGLLLAGWLLAGVPTHAAEPDAAQRAAFRQAYAAAQQGGDGWRSLASG
LRDYPLYPYLQAAALQHDIRQLDRASVEAYLAQYPDWIPAADLRRAFLLELARRQDWSTF
LALYQPGLGDTLACDALQARLAGGGTLEFERDLATLWTRPSLPDACDPVLAAAHDQGLLT
DARLWTRIDRAADAGQAGTIANLAGWLAEPDRASARQLAQALRDPAAALNAARSWPDQPR
QRQAATLALTRQARHDADAADAAWQQLRSRFRFSEAQRNQILQTLALYHATDFDGGALAR
LIALPAAAQTDGTREWRVRVALAQQDWNAVLAGLDAMPASQQQDGEWQYFRGRALAALGR
DDEARRLFDAQADKPTFFGFLSADRLDQPYAICPLTLADDPQREQALLANPGLLRAFELY
AVNLPKLARREWARALQDADPAAQRVAADMANRRGWYDRAVFTMSSGDALRLYDLRFPLA
SQDGLVPQAEQAGIEPAWAYGLLRAESAWMSDAQSGADARGLMQLLPATAALVAKRNGLD
WGGGDTLYDPVTNIALGTRYLAQMAARFGGSPWLASAAYNAGPNKVEQWLAARGTLAPDL
FIATIPYKETREYVARVMAFSVIYDWRLRGDTVMPMASRLGAIGQPYALPTAAAAHRTVA
CPAEAAATSAGAGSVSP