Protein Info for LRK53_RS00810 in Rhodanobacter sp000427505 FW510-R12

Annotation: sugar MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 16 to 36 (21 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 199 to 217 (19 residues), see Phobius details amino acids 246 to 266 (21 residues), see Phobius details amino acids 286 to 305 (20 residues), see Phobius details amino acids 314 to 332 (19 residues), see Phobius details amino acids 338 to 360 (23 residues), see Phobius details amino acids 372 to 391 (20 residues), see Phobius details amino acids 397 to 417 (21 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 382 (361 residues), 57.2 bits, see alignment E=7.1e-20 TIGR01272: glucose/galactose transporter WARNING" amino acids 98 to 415 (318 residues), 387.8 bits, see alignment E=2.2e-120

Best Hits

KEGG orthology group: None (inferred from 75% identity to hdn:Hden_2598)

Predicted SEED Role

"N-acetyl glucosamine transporter, NagP" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (428 amino acids)

>LRK53_RS00810 sugar MFS transporter (Rhodanobacter sp000427505 FW510-R12)
MATTLAAAPSERTHLGPMLVIGLLFFIFGFVTWLNGPLITFVKLAFDLDDVNAFLVPMAF
YLSYFFLALPSSAVLRRTGMKKGMALGLFVMALGAVLFGQFATMRLYPGALTGLFVIGAG
LSLLQTASNPYISILGPIDSAAQRIAFMGICNKLAGAIAPFVFGALVLSGIGTFGQQVES
APTPQAREALLNAFAGKVHLPYMVMAGLLVVLAIWIARSSLPEIRPAGANSEQAIGHRSG
SIFSFPHLWLGVLCLFLYVGVEVMAGDAIGTYGQGFGLPPDATKHFTSYTLLAMLAGYLA
GLALIPRFITQQRYLALSAVLGVVLAIGAWLTHGYVSVAFVAALGFANAMMWPAIFPLAI
NGLGRHTEAGSALLIMGIAGGAVVPQLFVHLKQHVDFQLAFTALVVPCYLYILYYGLAGH
RVGQQRTA