Protein Info for LRK53_RS00350 in Rhodanobacter sp000427505 FW510-R12

Annotation: DoxX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 119 transmembrane" amino acids 26 to 50 (25 residues), see Phobius details amino acids 57 to 77 (21 residues), see Phobius details PF07681: DoxX" amino acids 2 to 74 (73 residues), 69.8 bits, see alignment E=2.6e-23

Best Hits

Swiss-Prot: 47% identical to YQJF_ECOLI: Inner membrane protein YqjF (yqjF) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 49% identity to aci:ACIAD0149)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (119 amino acids)

>LRK53_RS00350 DoxX family protein (Rhodanobacter sp000427505 FW510-R12)
MAQLFIISGWQKLTGYSGTEGYFAQMGIPLVGVVTPLVILVELGGGLALLFGFKTRWVAA
VMALFTVGSALVAHTHLADPSQAINFMKNLSIAGGLLWFVRNGGGTASVDAAMDRPSHS