Protein Info for KEDOAH_26925 in Escherichia coli ECRC99

Name: yncE
Annotation: Uncharacterized protein YncE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF21783: YNCE" amino acids 71 to 333 (263 residues), 41.8 bits, see alignment E=2.3e-14 PF13360: PQQ_2" amino acids 166 to 303 (138 residues), 22.6 bits, see alignment E=1.9e-08

Best Hits

Swiss-Prot: 100% identical to YNCE_ECO57: Uncharacterized protein YncE (yncE) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 99% identity to ecd:ECDH10B_1582)

Predicted SEED Role

"FIG00638561: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (353 amino acids)

>KEDOAH_26925 Uncharacterized protein YncE (Escherichia coli ECRC99)
MHLRHLFSLRLRGSLLLGSLLVASSFSTQAAEEMLRKAVGKGAYEMAYSQQENALWLATS
QSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT
GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKDSVIWVVDGENIKLKTAI
QNTGKMSTGLALDSKGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT
ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVID
AKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRIAL