Protein Info for IAI46_19725 in Serratia liquefaciens MT49

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 39 to 57 (19 residues), see Phobius details amino acids 77 to 99 (23 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details amino acids 240 to 262 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 74% identity to ecz:ECS88_4997)

Predicted SEED Role

"FIG00639518: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>IAI46_19725 hypothetical protein (Serratia liquefaciens MT49)
MADIAIYQFFSYFNQKPLSDKNKMNYFFDVFNYLARKHWVTMIIMVTAIVSVLGALFSNL
QPVSLALLEIINEKKKFFLYMSAFLALLGFFIAVMTSYLNKGIGGRDIERTNHILYKEIF
KLNRRMTEVEDKSSSGISVEITEDERNKLISDAKKRIIGNTILLANSSLKSDISNFKKSY
SLHKLHTDMVLRLESEIDRLNRRGGVNLAIGSTIALTGILSLAYFLYNAPDIVDGLDFFI
HHLPKLSFVIVVELFAYFFLRLYKNGFDEIKYFQNEITNIEMKVMSLKYAQEFKSEDMIK
ELAMHLMKTERNFILEKGQTTVSIEKDRLQNISDSKLTSVISEIIKLKQK