Protein Info for IAI46_18980 in Serratia liquefaciens MT49

Annotation: multidrug efflux RND transporter permease subunit MdtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 336 to 353 (18 residues), see Phobius details amino acids 360 to 384 (25 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 490 (28 residues), see Phobius details amino acids 527 to 547 (21 residues), see Phobius details amino acids 853 to 871 (19 residues), see Phobius details amino acids 891 to 916 (26 residues), see Phobius details amino acids 953 to 970 (18 residues), see Phobius details amino acids 982 to 1008 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1008 (1005 residues), 1175.4 bits, see alignment E=0 PF03176: MMPL" amino acids 327 to 502 (176 residues), 28.3 bits, see alignment E=1.4e-10

Best Hits

Swiss-Prot: 81% identical to MDTC_CROS8: Multidrug resistance protein MdtC (mdtC) from Cronobacter sakazakii (strain ATCC BAA-894)

KEGG orthology group: K07789, RND superfamily, multidrug transport protein MdtC (inferred from 62% identity to bbr:BB4430)

MetaCyc: 81% identical to multidrug efflux pump RND permease subunit MdtC (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-352; TRANS-RXN-353; TRANS-RXN-92

Predicted SEED Role

"Multidrug transporter MdtC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1026 amino acids)

>IAI46_18980 multidrug efflux RND transporter permease subunit MdtC (Serratia liquefaciens MT49)
MKFFALFIYRPVATTLLTLAIAISGVIGFSLLPVSPLPQVDYPVISISASLPGADPETMA
SSVATPLERALGRIAGVNEMTSMSSLGSTRVILQFDLDRDINGAARDVQAAINAAQSLLP
TGMPSRPSYRKVNPSDAPIMILTLTSDTYSQGQLYDFASTQLAQKIAQTEGVGDVSVGGS
SLPAVRVELNPSALFNQGISLDAVRQTISDANVRRPQGSVDNQQQRWQIQANDELKTAEA
YRPLIIHYNNGAAVRLSDVAEIKDSVQDVRNAGMTNAKPAIILAISRAPDANIIETVDRI
RAELPALQDNIPASIQLNIAQDRSPTIRASLAEVEQSLVIAIGLVILVVFIFLRSGRATL
IPAVAVPVSLIGSFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHVEAGMKP
LNAALQGVREVGFTVLSMSVSLVAVFIPLLLMEGLPGRLFREFAVTLSVSIGLSLIISLT
LTPMMCAYLLRHQPPRAQRRIRGFGKMLLALQKGYGRSLSWVLGHSRWVLALFLATIALN
VWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRVKLEDFMKIVREDPDVENVTGFTG
GSRTNSGSMFISLKPLSVRSDDAQKVIARLRARLAKEPGASLFLMAVQDIRVGGRQANAS
YQYTLLADDLAALREWEPKIRIALAALPELADVNSDQQDKGSEMDLVYDRETMARLGISV
SDANNLLNNAFGQRQISTIYQPLNQYKVVMEVAPPYTQDVSSLDKMFVINKDGKAIPLSY
FASWRPANAPLSVNHQGLSAASTISFNLPDGGSLSDATSAVERTMTALGVPSTVRGAFAG
TAQVFQETLKSQLLLIAAAIATVYIVLGILYESYIHPLTILSTLPSAGVGALLALELFGA
PFSLIALIGIMLLIGIVKKNAIMMVDFALDAQRNGGINAHDAIFQACLLRFRPIMMTTLA
ALFGALPLVLTHGDGAELRQPLGITIAGGLIVSQLLTLYTTPVVYLYFDRLQMKFRRGKK
LDPLPQ