Protein Info for IAI46_16925 in Serratia liquefaciens MT49

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 47 to 68 (22 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 145 to 167 (23 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 242 to 265 (24 residues), see Phobius details amino acids 284 to 304 (21 residues), see Phobius details amino acids 316 to 334 (19 residues), see Phobius details amino acids 340 to 362 (23 residues), see Phobius details amino acids 374 to 397 (24 residues), see Phobius details amino acids 405 to 425 (21 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 390 (377 residues), 196.6 bits, see alignment E=5.7e-62

Best Hits

Swiss-Prot: 40% identical to GUDP_BACSU: Probable glucarate transporter (gudP) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 83% identity to dda:Dd703_0945)

Predicted SEED Role

"MFS transporter, phthalate permease family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (454 amino acids)

>IAI46_16925 MFS transporter (Serratia liquefaciens MT49)
MKATKSRFFILSLLFIVTAINYMDRANLSVAGSKIQSEFDLSATQLGLLFSMFTWFYAAS
QIPVGYVLDRIGSRILYGSAIILWSVFTFLMGFASHHLFATATASFLMLLACRALIGIAE
APSFPSNTKIIASWFPDHERARATAIYSSAQYIGLALLTPALSYVVAEYGWEMSFYLSGG
VGILFGIYWLLKYRDPQHSNSTNQQELDYIREGGGYGSKNQASVSEKVRWRDIAFFLKNR
TIWGLFIAQFACSSTLYFFLTWFIVYLEKGLHLPIAKAGLGASFPYLMAMAGVLCGGTLS
DMLLKKGKSRTFARKLPVMSGLCLTMIICLVNFFEDQPVIAIAILSVAFFANAFSNLGWV
VWSDVIPRNFIGTMGGCLNICGNLSGIVSPIVIGVILQRTNNFHYAMWYIAAVALLGLLA
YTFLVGKIEVIVPPKPEQPLTPQPNADLHKLEAK