Protein Info for IAI46_11730 in Serratia liquefaciens MT49

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details transmembrane" amino acids 48 to 68 (21 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 162 to 181 (20 residues), see Phobius details amino acids 193 to 214 (22 residues), see Phobius details amino acids 224 to 242 (19 residues), see Phobius details amino acids 263 to 284 (22 residues), see Phobius details amino acids 290 to 313 (24 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details amino acids 354 to 379 (26 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details amino acids 432 to 453 (22 residues), see Phobius details PF07690: MFS_1" amino acids 15 to 405 (391 residues), 154.8 bits, see alignment E=1.5e-49 amino acids 271 to 462 (192 residues), 52 bits, see alignment E=2.7e-18

Best Hits

KEGG orthology group: None (inferred from 96% identity to spe:Spro_2292)

Predicted SEED Role

"Methylenomycin A resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>IAI46_11730 MFS transporter (Serratia liquefaciens MT49)
MSFFSRASALPLLVAGAFFMENLDGTVIVTAMPQMAAAFGVRPVDMNIGISAYILTLTVF
IPASGWIANRFGARNIFAAAVLIFTLASVLCAASVNLPTFTAARILQGFGGALMVPVGRL
VVLRNTAKPDLIKAIATITWPGLVAPILGPPVGGFITTYASWHWIFILNVPLGIAALWLA
WRLIPQEAPQKGVPFDALGFVLTGIACFGLMFGLDLINHPQLSWLVPALCIFGSLALGAL
AVRHAKRTAHPLINLWAMRIKSYAVTIWGGTLFRIAIGAVPFLLPLLFQIGFGLNAFDAG
LLVLAVFAGNLVMKPFTSAVLYRFRFRTTLVVNGLLNAATIFACALLTPQTPTWLILGLL
FVSGLTRSMQFTALNTLAFSEVPQPQMNGANTLFNVSQQMGSGLGIAIGALALRLAEMLM
PQSTARIPLVDFQLAFVVIGVIALLAVIDSFTLDPNAGSEVRQRKPAAEPLPLSPQRLQK