Protein Info for IAI46_04720 in Serratia liquefaciens MT49

Annotation: sugar ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 PF00005: ABC_tran" amino acids 22 to 171 (150 residues), 110.6 bits, see alignment E=9.8e-36 amino acids 271 to 425 (155 residues), 73 bits, see alignment E=4.1e-24

Best Hits

Swiss-Prot: 82% identical to RBSA2_ECO57: Ribose import ATP-binding protein RbsA 2 (rbsA2) from Escherichia coli O157:H7

KEGG orthology group: K10441, ribose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 96% identity to srs:SerAS12_0951)

Predicted SEED Role

"ABC transport system, ATP-binding protein Z5691"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (506 amino acids)

>IAI46_04720 sugar ABC transporter ATP-binding protein (Serratia liquefaciens MT49)
MSATPILEMHNIAKSFGQFYALKGVNLTVYRGEIHALMGENGAGKSTLMKILAGAYIASS
GEIFIDGQPFAIKGPKDALAAGITLIYQEMNLAPNLTVAENIFLGSEIQRGGLVKRGQML
LEAQKVIDRLGAQFSAGDRVMKLTIAEQQQVEIARALHRNSRILVMDEPTAALSSRETHR
LFELIKRLRDEGMAIIYISHRMAEVYELSDRVSVLRDGQYVGSLMRDKLSASELVRMMVG
RPLSDLFNKEQGIPVGEPRLTLHGLTDGKKVKPVSLQVRAGEIVGLAGLVGAGRSELAQL
IFGVRKSSGGTVEVDGKPASIHSPRDAIALGIGFLTENRKEQGLFLDLAAHENIVMATLE
RDGRYGLLNRRKAQRISSDAIGLLNIRVPHAQVRAGGLSGGNQQKLLISRWVAIGPRILI
LDEPTRGVDVGAKSEIYRIMSQMAQQGVAILMISSELPEVVGMSDRVYVMHEGSIVGELG
GGEISQENIMTLATGVDTTQPQATTA