Protein Info for HUW76_07355 in Fusobacterium nucleatum SB010

Annotation: recombinase RecA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 TIGR02012: protein RecA" amino acids 20 to 339 (320 residues), 552.9 bits, see alignment E=1.2e-170 PF00154: RecA" amino acids 22 to 283 (262 residues), 441 bits, see alignment E=3e-136 PF08423: Rad51" amino acids 51 to 264 (214 residues), 40.8 bits, see alignment E=3.2e-14 PF06745: ATPase" amino acids 55 to 220 (166 residues), 30.6 bits, see alignment E=4.5e-11 PF21096: RecA_C" amino acids 286 to 341 (56 residues), 68.3 bits, see alignment 9.9e-23

Best Hits

Swiss-Prot: 94% identical to RECA_FUSNN: Protein RecA (recA) from Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)

KEGG orthology group: K03553, recombination protein RecA (inferred from 94% identity to fnu:FN0547)

MetaCyc: 60% identical to DNA recombination/repair protein RecA (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"RecA protein" in subsystem DNA-replication or DNA repair, bacterial or DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (379 amino acids)

>HUW76_07355 recombinase RecA (Fusobacterium nucleatum SB010)
MAAKKEKNAPDAKITDKEGKEKAVKDAMAAITKGFGAGLIMKLGEKSSMNVESIPTGSIN
LDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYAKA
LGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGL
QARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRLEVK
KMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISRIGEIIDAAVARDVIVK
AGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEKDLKEAIAKGPIEKKKKKSKKEVASD
DTDTDENNEIDDDAVENND