Protein Info for HUW76_05135 in Fusobacterium nucleatum SB010

Annotation: TIGR02206 family membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 39 to 57 (19 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 96 to 113 (18 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details TIGR02206: conserved hypothetical integral membrane protein TIGR02206" amino acids 3 to 222 (220 residues), 246.8 bits, see alignment E=7.9e-78 PF14808: TMEM164" amino acids 7 to 215 (209 residues), 167.2 bits, see alignment E=2.1e-53

Best Hits

KEGG orthology group: None (inferred from 89% identity to fnu:FN0996)

Predicted SEED Role

"alternate gene name: ipa-11d"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (232 amino acids)

>HUW76_05135 TIGR02206 family membrane protein (Fusobacterium nucleatum SB010)
MEDKFVLFSNQHFITMGIGFASCILLIFLGFFTEKKAAFAKIIAIAVLGIKIAELIFRHY
YYGETVAELLPLHLCPIVIILSIFMMFFHSEVLFQPVYFWSIGAFFAILTPDIRDGMGNF
ASQSFFITHFFILFSTAYAFVHFRFRPTKAGFIGSFLSLITLAFIMYFVNNRLGTNYLYV
NYPPATKSLVDFMGPWPYYIFSIAGIDIAISFFMYLPFRKNKKAKYASWRKY