Protein Info for HUW76_04770 in Fusobacterium nucleatum SB010

Annotation: YitT family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 50 to 74 (25 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 148 to 183 (36 residues), see Phobius details PF02588: YitT_membrane" amino acids 12 to 215 (204 residues), 229.8 bits, see alignment E=2.3e-72 PF10035: DUF2179" amino acids 220 to 274 (55 residues), 83.1 bits, see alignment E=9.7e-28

Best Hits

Swiss-Prot: 33% identical to YXKD_BACSU: UPF0750 membrane protein YxkD (yxkD) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 95% identity to fnu:FN0789)

Predicted SEED Role

"hypothetical protein BH3604"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (280 amino acids)

>HUW76_04770 YitT family protein (Fusobacterium nucleatum SB010)
MSNKYFQIIKEYSIVTLACIVMAFNINYFFLANKLAEGGIAGISLIIHYLTNIDIGYLYF
ILNIPLIILAYMFIGKDFLIKTLFATLVLTIFLKIFGNFRGPIDDILMAAIFGGGINGIA
IGIVFYAGGSTGGTDIIAKIINKYYGIAIGKILLTIDFIILSMVAFIFGKVIFMYTLISL
LVSAKMVDIIQEGIYSAKGVTIITNKVEELRKKIMEDTGRGITLINAKGAYTQKEIGMLY
CVVGKYQLIKVKNIVKEIDPEAFMIVSQVHEVIGKGFLGQ