Protein Info for HUW76_03365 in Fusobacterium nucleatum SB010

Annotation: phage major capsid protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 599 TIGR01554: phage major capsid protein, HK97 family" amino acids 211 to 596 (386 residues), 206.5 bits, see alignment E=3.6e-65 PF05065: Phage_capsid" amino acids 316 to 595 (280 residues), 140.4 bits, see alignment E=4e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (599 amino acids)

>HUW76_03365 phage major capsid protein (Fusobacterium nucleatum SB010)
MPKKKNKMKFSDEVLNFKCNLAEFKEDENSKGKFKGLLVNMQGDNTAKGIYRFKTGSMKK
NDGKKLFLQYNHEGSLIPIGTLIGKETKEGFEVEGTFHLQKDESGAYINPEAMKVYSLMK
DLGAEFEMSVGGVMTKYKDYVEDGKYYIDILEFDAYEGSLTPKAAVPGSRVTRVFGEENI
GGNRMGKDELIAIFTGLLETFKADLLKAGTDEEISKLPAEFSKLTEQFNGLKDSLEKDLK
ENFSKQINELNDVLKGLKADFKATEEEVDDAAQFKAMLLNVKDNGQKNEIVFNEDSKLEF
KDMTVGDGKTGSTTGKAIVTTTIVKKILERIQDSNPVLKDITFITTDDAGITIPREMAGL
PEVGWVGEVEERKDTAVTKVENITVNIFQLYALPVVTNKLLATNYVGYATFLLKRVEYAL
GLKLADSVFNGSGTNMPLGILKDTAVTNQQEIDTSDDAKFIESIIDIYYSIPTDVAKESS
WYIRRETWQQISKLKNTNKDFYITDLNTGNTRTLMSRPVELVESEGSGLKTLKEAVAVTD
PVMVFGNVKEGLLGIENPKMTMKLEDQITSKGLTKYYMEKGVGVGVQLPEYFVKVVKKA