Protein Info for HMPREF1181_RS15185 in Bacteroides stercoris CC31F

Annotation: excinuclease ABC subunit UvrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 942 TIGR00630: excinuclease ABC subunit A" amino acids 8 to 925 (918 residues), 1337.1 bits, see alignment E=0 PF17760: UvrA_inter" amino acids 135 to 240 (106 residues), 108.6 bits, see alignment E=4.4e-35 PF17755: UvrA_DNA-bind" amino acids 292 to 400 (109 residues), 91.4 bits, see alignment E=1.4e-29

Best Hits

KEGG orthology group: K03701, excinuclease ABC subunit A (inferred from 94% identity to bhl:Bache_2141)

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (942 amino acids)

>HMPREF1181_RS15185 excinuclease ABC subunit UvrA (Bacteroides stercoris CC31F)
MQEETEYINVYGARVHNLKDIDAEIPRNSLTVITGLSGSGKSSLAFDTIFAEGQRRYIET
FSAYARNFLGNLERPDVDKITGLSPVISIEQKTTNKNPRSTVGTTTEIYDYLRLLYARAG
EAYSYLSGEKMVKYTEEQILELILNDYKGKRIYILAPLVRNRKGHYKELFEQIRKKGYLY
VRVDGEVREALPGMKLDRYKNHDVEVVIDKLVVADKDDTRLKNSVAVAMRQGDGLLMVLD
AQSESVRHYSKRLMCPVTGLSYREPAPHNFSFNSPQGACPKCKGLGVVSQIDIDKIIPDR
ELSISGGAIIPLGKAKNSMIFWQIAALLEKYEATLKTPVRELPDDAIDEILYGSDERIKI
KSSLIGTSSDYFVTFEGVVKYIQMLQEKDASATAQKWAEQFARTAVCPECHGAKLNKEAL
SFRIHDKNIYELSTMDINELYDWLMNVDQYLSRKQQQIAVEILKEIRTRLKFLLDVGLDY
LSLDRSAVSLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNLRLIHSLKELRDM
GNSVIVVEHDKDMMLAADYVIDMGPKAGRLGGEVVFAGTPQQMLRTHTLTSRYLNGECAI
EVPAERRKGNGHSLWLRGARGNNLKNVDVEFPLGKLICVTGVSGSGKSTLINETLQPILS
QKFYRSLQDPLEYGSIEGLEYIDKVVNVDQSPLGRTPRSNPATYTGVFSDIRNLFVGLPE
AKIRGYKAGRFSFNVSGGRCEACQGNGYKTIEMNFLPDVYVPCEVCHGKRYNRETLEVRF
KGKSIADVLDMTINRAVEFFENVPQILNKIKVIQEVGLGYIKLGQSSTTLSGGESQRVKL
ATELSKRDTGKTLYILDEPTTGLHFEDIRVLMNVLNKLVDKGNTVIVIEHNLDVIKMADY
IIDMGPEGGKGGGELLSCGTPEEVAMSTKGYTPKFLKEELHL