Protein Info for HMPREF1181_RS10175 in Bacteroides stercoris CC31F

Annotation: RHS repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 TIGR01643: YD repeat (two copies)" amino acids 64 to 94 (31 residues), 17.1 bits, see alignment (E = 3e-07) amino acids 75 to 108 (34 residues), 16.7 bits, see alignment 4.1e-07 amino acids 124 to 160 (37 residues), 29 bits, see alignment 5.5e-11 amino acids 164 to 201 (38 residues), 18.1 bits, see alignment 1.5e-07 amino acids 225 to 258 (34 residues), 21.7 bits, see alignment 1.1e-08 PF05593: RHS_repeat" amino acids 75 to 108 (34 residues), 25.9 bits, see alignment 5.4e-10 amino acids 125 to 157 (33 residues), 32.1 bits, see alignment (E = 5.9e-12) amino acids 188 to 219 (32 residues), 25.9 bits, see alignment (E = 5.1e-10) amino acids 329 to 362 (34 residues), 26.9 bits, see alignment 2.5e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>HMPREF1181_RS10175 RHS repeat protein (Bacteroides stercoris CC31F)
WRNGLAWYFEYDGTGVGSRCVHTWGDGGIYDHKLTFREGVTEVLDSHGGLTVYHHRGGLV
WKKVDANGGEHLWRYDDSRQLLAQTDPLGNSTLYKYDRWGNCTDSSDPCGGSVSAVYPGK
GGLRNRPISVTTPDGGTWEFGYDRSGNPVSRTNPEGAVTRMTYRDGAVASVKDPYGVVTK
LAYDRFRNLTEASDSRGNTSLYGYDLLGRCVSVTNPKGAVQKREYDPVGRVVHVLDFDGN
DIRLSYDGIDNLTEYRDNVQHVEYGYSGMWKLTRRRDHRGVVNFRYDREERLRRVTNEKL
QSYEFTLDAVGNVTAEKGFDGAVRHYLRDRGGRVVRETLPSGTEREYGYDACSRVTRVSY
PTAGDPDQTYAYGLSGRLVQASRGESTVEFAYNSLGLPVRETADGNTILRTYDHTGRILT
LDST