Protein Info for HMPREF1181_RS10000 in Bacteroides stercoris CC31F

Annotation: SusD/RagB family nutrient-binding outer membrane lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 507 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF12771: SusD-like_2" amino acids 30 to 473 (444 residues), 279.2 bits, see alignment E=5.8e-87 PF12741: SusD-like" amino acids 82 to 504 (423 residues), 226.7 bits, see alignment E=6.6e-71

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (507 amino acids)

>HMPREF1181_RS10000 SusD/RagB family nutrient-binding outer membrane lipoprotein (Bacteroides stercoris CC31F)
MLAKYLRTTLTCAACILLTACNFEDKNTNPNESTFIKPGPLLTYTQLNTSIDGHTKNMQI
GCCMMMVQQTASLESTEAGVGDKYYMMQAPATSYFLDFYSTAIKNWREMEYQASQKPEYQ
NMLAVAKIWGAFLFQRMTDLYGNVPYSEAGYAFYQNIYKPKYDSQESIYTDMIEQVKEGI
SLLSTEKPGIEGDLFYNGDISQWKKFGNSLLLRIGMRLSKVNPELAGTTAKAAIDGGIMN
EAKDMCRVRHIAGGRDDDKNPVTLRFQKDNYIGQDKVKISRTFMNHLKDTQDPRISVFCS
LKDGNSNPELQKGLPNGYDKNTISTCPDYTGKIEEYSNFNTQIILREDAPTLLLMPSESK
LLQAEAALRQWIQGDPNELYKEAVRLSMQEQKEAYGVSIPEEWINAYLAQNLFENAATQE
EKLEVLGKEYWVTTFMNGYESYANWRRCGYPRLVPTQYLGNESNGQIPRRLTYATDEYTI
NRANVEKAIQQQGPDNMNTRIWWDVDK