Protein Info for HMPREF1181_RS05945 in Bacteroides stercoris CC31F

Annotation: DUF4836 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF16120: DUF4836" amino acids 31 to 254 (224 residues), 149.3 bits, see alignment E=9.4e-48

Best Hits

KEGG orthology group: None (inferred from 60% identity to bhl:Bache_1501)

Predicted SEED Role

"FIG00405862: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (366 amino acids)

>HMPREF1181_RS05945 DUF4836 family protein (Bacteroides stercoris CC31F)
MRKSISFYLLPVLLTVLCLSSCSETGQKTEYTHVIPANATEVAALDLKSIVDKAGLNTSD
SRATLQKFLGLLLEGGSANLKQEAETLLKDPAESGIDWNAPLYVFEAPTLHNTAITLKIA
DLKKFEAMLRLLVQEQLCTAPVEAGGYRSVEIKDAGVLLAYNDGTLLGVYGGSTEQLKKL
QPAITALMQQPADKSIRTGKYFAPMMQQKGDIRLLATPDALPMDVRGVLTWPHGTQLLGY
VLFENGRIYATLQNADFKGNTKESNQPFHPQNSRELQQAMLNMMHGRAFNISLTSNELLT
LSNLRVLMEYAPNEPEVNILYQLIMKIEELNLRGDKNRTNFTVVLNEKNENALKQLTDFA
KLFIGM