Protein Info for HMPREF1181_RS04410 in Bacteroides stercoris CC31F

Annotation: UpxZ family transcription anti-terminator antagonist

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 PF06603: UpxZ" amino acids 2 to 104 (103 residues), 135.7 bits, see alignment E=3.5e-44

Best Hits

KEGG orthology group: None (inferred from 54% identity to bfs:BF1550)

Predicted SEED Role

"UpdZ protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (153 amino acids)

>HMPREF1181_RS04410 UpxZ family transcription anti-terminator antagonist (Bacteroides stercoris CC31F)
MDSLFSLAHRLLTYGLDGSPIYVDEFTRLNREVYEQALELYGTRGKTVESEAELCLGLLT
AFAATIYDNGHKQQYIQRVLDRSWEVLPKLSASLLKVQLLVYCYSEVYDEELSRQAHSII
ATWDKAELTLEQVDIIEELKSFEENQYPYEVIE