Protein Info for HMPREF1181_RS02600 in Bacteroides stercoris CC31F

Annotation: Fe-S cluster assembly protein SufD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 PF19295: SufBD_N" amino acids 1 to 172 (172 residues), 277.7 bits, see alignment E=3.2e-87 TIGR01981: FeS assembly protein SufD" amino acids 150 to 425 (276 residues), 252 bits, see alignment E=3.4e-79 PF01458: SUFBD" amino acids 184 to 408 (225 residues), 241.3 bits, see alignment E=1e-75

Best Hits

KEGG orthology group: K09015, Fe-S cluster assembly protein SufD (inferred from 90% identity to bhl:Bache_0513)

Predicted SEED Role

"Iron-sulfur cluster assembly protein SufD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>HMPREF1181_RS02600 Fe-S cluster assembly protein SufD (Bacteroides stercoris CC31F)
MSVEQQYIDLFSQTEAMICRHSAEALNAPRAAAFADFERLGFPTRKTEKYKYTDVSKFFE
PDYGLNLNRLEIPVNPYEVFKCDVPNMSTSLYFVVNDAFYNKALPKSHLPEGVIFGSLKE
MAEQRPELVKKYYGKLADTSKDGVTAFNTAFAQDGVLLYVPKNVAVEKPIQLVNILRGDV
NFMVNRRVLIILEEGAQARLLACDHAMDSVNFLATQVVEVFVGENATFDFYELEETHTST
VRISSLYVRQEANSNVLLNGMTLHNGTTRNTTEVTLAGEGAELNLCGMAVADKNQHVDNN
TTIDHAVPNCTSNELFKYVLDDQSVGAFAGLVLVRPGAQHTSSQQTNRNLCATREAHMYT
QPQLEIYADDVKCSHGATVGQLDESALFYMQQRGISVHEARLLLMFAFVNEVIDTIRLDA
LKDRLHLLVEKRFRGELNKCRGCAICK