Protein Info for HMPREF1181_RS00485 in Bacteroides stercoris CC31F

Annotation: 50S ribosomal protein L29

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 65 PF00831: Ribosomal_L29" amino acids 5 to 60 (56 residues), 67.4 bits, see alignment E=4.4e-23 TIGR00012: ribosomal protein uL29" amino acids 5 to 60 (56 residues), 35.1 bits, see alignment E=5.3e-13

Best Hits

Swiss-Prot: 94% identical to RL29_BACTN: 50S ribosomal protein L29 (rpmC) from Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)

KEGG orthology group: K02904, large subunit ribosomal protein L29 (inferred from 91% identity to bfs:BF3995)

Predicted SEED Role

"LSU ribosomal protein L29p (L35e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (65 amino acids)

>HMPREF1181_RS00485 50S ribosomal protein L29 (Bacteroides stercoris CC31F)
MKIAEIKEMTTNDLVERVEAEVANYSQMVLNHSISPLDNPAQIKQLRRTIARMKTELRQR
ELNNK