Protein Info for HGI48_RS20795 in Dickeya dianthicola 67-19

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 49 to 67 (19 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 113 to 142 (30 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 222 to 248 (27 residues), see Phobius details amino acids 254 to 273 (20 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details amino acids 313 to 332 (20 residues), see Phobius details amino acids 344 to 368 (25 residues), see Phobius details amino acids 374 to 393 (20 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 281 (255 residues), 67.6 bits, see alignment E=4.8e-23 amino acids 255 to 394 (140 residues), 40.7 bits, see alignment E=7.4e-15

Best Hits

Swiss-Prot: 71% identical to YHHS_ECOLI: Uncharacterized MFS-type transporter YhhS (yhhS) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to ddd:Dda3937_02004)

Predicted SEED Role

"Transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A7L9RIK5 at UniProt or InterPro

Protein Sequence (403 amino acids)

>HGI48_RS20795 MFS transporter (Dickeya dianthicola 67-19)
MPVSTPPAKPSPSGLRLNLRIMSVVMFNFASYLNIGLPLAVLPGYVHEHLGFSAFWAGLV
ISLQYFSTLLSRPRAGRHADEKGPKQVVVFGLSGVLLSGVFYALAAWNDGSPVLALALLC
VGRLVLGIGQSFAGTGATLWGVGVVGSLHIGRVISWNGVATYGAMAIGAPLGVWIYHLGG
LRLLAIVIVLVAGAAILLALPRPAVTVTPGKKLPFREVLGKVWLYGMILSLASAGFGVIS
TFITLFYASRQWDGAALTLSLFSCAFVGTRLLFPNVISRFGGLRVALACFLVESAGLLLV
WLASHPLMAETGAFFAGAGFSLVFPALGVVAVKAVSTQNQGSALATYTIFLDLSLGVVGP
AAGVMMAYTDIDAIYLAAAGLALVGLLLTVRLYQRGGRDAKAV